doc. RNDr. Radka Svobodová, Ph.D.

Head of Core Facility, Biological Data Management and Analysis Core Facility

Office: bldg. C04/233
Kamenice 753/5
625 00 Brno

Phone:	+420 549 49 4860
E‑mail:

social and academic networks:

Basic information

Supervision

Qualifications

Publications

Type

Total number of publications: 177

2024

AlphaFind — discover structure similarity across the proteome in AlphaFold DB

GREŠOVÁ Katarína ŠPRINGEROVÁ Pavlína SLANINÁKOVÁ Terézia PROCHÁZKA David OĽHA Jaroslav ROŠINEC Adrián JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Conference abstract

Year: 2024, type: Conference abstract
AlphaFind — discover structure similarity across the proteome in AlphaFold DB

SLANINÁKOVÁ Terézia PROCHÁZKA David OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína ČILLÍK Jakub JÁNOŠOVÁ Miriama PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Conference abstract

Year: 2024, type: Conference abstract
AlphaFind: Discover structure similarity across the entire known proteome

PROCHÁZKA David SLANINÁKOVÁ Terézia OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Year: 2024
AlphaFind: discover structure similarity across the proteome in AlphaFold DB

PROCHÁZKA David SLANINÁKOVÁ Terézia OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

Article in Periodical

Nucleic acids research, year: 2024, volume: 52, edition: July 5, DOI
CF Day 2023

HOŠKOVÁ Kateřina FAJTLOVÁ Šárka PLEVKA Pavel MIKL Michal EŠNER Milan SVOBODOVÁ Radka TICHÝ Boris

Popularization text

Year: 2024, type: Popularization text
Data Management and FAIRification in MAFIL

SVOBODA Tomáš ČILLÍK Jakub MIKL Michal SLAVÍČEK Tomáš SVOBODOVÁ Radka

Conference abstract

Year: 2024, type: Conference abstract
Fast, structure-based searching in a large-scale protein data repository

SLANINÁKOVÁ Terézia GREŠOVÁ Katarína PROCHÁZKA David SPIŠAKOVÁ Viktória ROŠINEC Adrián ČILLÍK Jakub ŠPRINGEROVÁ Pavlína KŘENEK Aleš DOHNAL Vlastislav SVOBODOVÁ Radka ANTOL Matej

Conference abstract

Year: 2024, type: Conference abstract
ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BEDNÁŘ David BERKA Karel

Article in Periodical

Nucleic Acids Research, year: 2024, volume: 52, edition: D1, DOI
Rare ring conformations in PDB: Facts or wishful thinking?

BUČEKOVÁ Gabriela DOSHCHENKO Viktoriia CHARESHNEU Aliaksei PORUBSKÁ Jana PAJTINKA Michal OLEKSIK Michal SVOBODA Tomáš HORSKÝ Vladimír SVOBODOVÁ Radka

Article in Periodical (without peer review)

Year: 2024, type: Article in Periodical (without peer review)
RBP-Tar – a searchable database for experimental RBP binding sites

GREŠOVÁ Katarína RAČEK Tomáš MARTINEK Vlastimil ČECHÁK David SVOBODOVÁ Radka ALEXIOU Panagiotis

Article in Periodical

F1000Research, year: 2024, DOI

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