prof. RNDr. Jiří Šponer, DrSc.

2005

• RNA Kink-turns as Flexible Molecular Hinges of the Ribosomal "LEGO". The Role of Second A-minor Motif and Nominally Unpaired Bases

  RÁZGA Filip KOČA Jaroslav LEONTIS N.B. ŠPONER Jiří

  Article in Proceedings

  14th Conference on Current Trends in Computational Chemistry 2005, year: 2005

• RNA K-turns-Flexible Ribosomal Motifs:Dynamics, Hydration, Conformations and Biological Relevance

  RÁZGA Filip KOČA Jaroslav LEONTIS Neocles B ŠPONER Jiří

  Article in Proceedings

  Workshop on Modeling Interactions in Biomolecules II, year: 2005

2004

• Long-residency hydration, cation binding and dynamics of Loop E/Helix IV rRNA - L25 protein complex

  RÉBLOVÁ Kamila SPACKOVÁ Nadezda KOČA Jaroslav LEONTIS Neocles SPONER Jiri

  Article in Periodical

  Biophysical Journal, year: 2004, volume: 87, edition: 5

• Molecular dynamics simulations of guanine quadruplex loops:Advances and force field limitations

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠTEFL Richard KOČA Jaroslav CHEATHAM Thomas E. ŠPONER Jiří

  Article in Periodical

  Biophysical Journal, year: 2004, volume: 87, edition: 1

• Molekulově Dynamická simulace flexibilních RNA motivů

  RÁZGA Filip KOČA Jaroslav ŠPONER Jiří LEONTIS Neocles B.

  Article in Proceedings

  Sborník abstraktů Studentská vědecká konference v oboru chemie a biochemie, year: 2004

• Ribosomal RNA Kink-turn Motif - A Flexible Molecular Hinge

  RÁZGA Filip ŠPAČKOVÁ Naďa RÉBLOVÁ Kamila KOČA Jaroslav LEONTIS Neocles B. ŠPONER Jiří

  Article in Periodical

  Journal of Biomolecular Structure & Dynamics, year: 2004, volume: 22, edition: 2

• Ribosomal RNA Kink-turn motif - a flexible molecular hinge

  RÁZGA Filip ŠPAČKOVÁ Naděžda RÉBLOVÁ Kamila KOČA Jaroslav LEONTIS Neocles B. ŠPONER Jiří

  Article in Proceedings

  Conference on Current Trends in Computational Chemistry, year: 2004

2003

• Conformational Flexibility of DNA sequences studied by Advanced Molecular Mechanics and Dynamics Tools

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  Book of Abstracts, year: 2003

• Formation Pathways of a Guanine-Quadruplex DNA Revealed by Molecular Dynamics and Thermodynamics Analysis of the Substates

  ŠTEFL Richard CHEATHAM Thomas E. ŠPAČKOVÁ Naděžda FADRNÁ Eva BERGER Imre KOČA Jaroslav ŠPONER Jiří

  Article in Periodical

  Biophysical Journal, year: 2003, volume: 85, edition: 3

• Molecular Dynamics of Guanine Quadruplex Molecules

  ŠPAČKOVÁ Naděžda ŠTEFL Richard BERGER Imre FADRNÁ Eva KOČA Jaroslav CHEATHAM III T.E. ŠPONER Jiří

  Article in Proceedings

  Book of Abstracts, year: 2003