Mgr. Zdeněk Kubát, Ph.D.

2024

• Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning

  HORVÁTH Jakub JEDLIČKA Pavel KRÁTKÁ Marie KUBÁT Zdeněk KEJNOVSKÝ Eduard LEXA Matej

  Article in Periodical

  BIODATA MINING, year: 2024, volume: 17, edition: 1, DOI

• Rumex hastatulus: one species, two karyotypes

  KRUŽLICOVÁ Jana BODLÁKOVÁ Markéta BAČOVSKÝ Václav WRIGHT Stephen KUBÁT Zdeněk HOBZA Roman

  Conference abstract

  Year: 2024, type: Conference abstract

2023

• Evolutionary Dynamics of LTR Retrotransposons in Holocentric Plants from Juncaceae Family

  KRÁTKÁ Marie JEDLIČKA Pavel KUBÁT Zdeněk KEJNOVSKÝ Eduard

  Conference abstract

  Year: 2023, type: Conference abstract

2022

• HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization

  LEXA Matej ČECHOVÁ Monika NGUYEN Son Hoang JEDLIČKA Pavel TOKAN Viktor KUBÁT Zdeněk HOBZA Roman KEJNOVSKÝ Eduard

  Article in Periodical

  BIOINFORMATICS, year: 2022, volume: 38, edition: 16, DOI

• LTR retrotransposons in holocentric plants from the Cyperaceae and Juncaceae families

  KRÁTKÁ Marie JEDLIČKA Pavel KUBÁT Zdeněk TOKAN Viktor ŠMERDA Jakub BUREŠ Petr KEJNOVSKÝ Eduard

  Conference abstract

  Year: 2022, type: Conference abstract

2021

• Fundamentally different repetitive element composition of sex chromosomes in Rumex acetosa

  JESIONEK Wojciech Krzysztof BODLÁKOVÁ Markéta KUBÁT Zdeněk ČEGAN Radim VYSKOT Boris VRÁNA Jan ŠAFÁŘ Jan PUTEROVA Janka HOBZA Roman

  Article in Periodical

  Annals of Botany, year: 2021, volume: 127, edition: 1, DOI

2014

• Identification of a Novel Retrotransposon with Sex Chromosome-Specific Distribution in Silene latifolia

  KRÁLOVÁ Tereza ČEGAN Radim KUBÁT Zdeněk VRÁNA Jan VOGEL Ivan KEJNOVSKÝ Eduard HOBZA Roman

  Article in Periodical

  Cytogenetic and Genome Research, year: 2014, volume: 143, edition: 1-3, DOI

• Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome

  KUBÁT Zdeněk ŽLUVOVÁ Jitka VOGEL Ivan KOVÁČOVÁ Viera ČERMÁK Tomáš CEGAN Radim HOBZA Roman VYSKOT Boris KEJNOVSKÝ Eduard

  Article in Periodical

  New Phytologist, year: 2014, volume: 202, edition: 2, DOI

2013

• Expansion of Microsatellites on Evolutionary Young Y Chromosome

  KEJNOVSKÝ Eduard MICHALOVOVÁ Monika ŠTEFLOVÁ Pavlína KEJNOVSKÁ Iva MANZANO Susana HOBZA Roman KUBÁT Zdeněk KOVAŘÍK Jan JAMILENA Manuel VYSKOT Boris

  Article in Periodical

  PLoS One, year: 2013, volume: 8, edition: 1, DOI

2012

• Genomic diversity in two related plant species with and without sex chromosomes – Silene latifolia and S. vulgaris.

  CEGAN R VYSKOT Boris KEJNOVSKÝ Eduard KUBÁT Zdeněk BLAVET Hana SAFAR Jan DOLEŽEL Jaroslav BLAVET N HOBZA Roman

  Article in Periodical

  PLoS Biology, year: 2012, volume: 7, edition: 2, DOI