RNDr. David Sehnal, Ph.D.

Researcher III, National Centre for Biomolecular Research

correspondence Address:
Kotlářská 267/2, 611 37 Brno

office: bldg. C04/214
Kamenice 753/5
625 00 Brno

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phone:	+420 549 49 8127
e‑mail:

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Basic information

Type

Total number of publications: 69

2024

ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BEDNÁŘ David BERKA Karel

Article in Periodical

Nucleic Acids Research, year: 2024, volume: 52, edition: D1, DOI

2023

ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era

ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BERKA Karel

Conference abstract

Year: 2023, type: Conference abstract
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations

CHARESHNEU Aliaksei MIDLIK Adam IONESCU Crina-Maria ROSE Alexander HORSKÝ Vladimír CANTARA Alessio SVOBODOVÁ Radka BERKA Karel SEHNAL David

Article in Periodical

Nucleic Acids Research, year: 2023, volume: 51, edition: W1, DOI
PDBImages: a command-line tool for automated macromolecular structure visualization

MIDLIK Adam NAIR Sreenath ANYANGO Stephen DESHPANDE Mandar SEHNAL David VARADI Mihaly VELANKAR Sameer

Article in Periodical

Bioinformatics, year: 2023, volume: 39, edition: 12, DOI

2022

CoverView: clear atom-level visualization of electron density coverage of PDB structures to assist validation

CHARESHNEU Aliaksei SEHNAL David SVOBODOVÁ Radka

Year: 2022
PDBe and PDBe-KB: Providing high-quality, up-to-date and integrated resources of macromolecular structures to support basic and applied research and education

VARADI Mihaly ANYANGO Stephen APPASAMY Sri Devan ARMSTRONG David BAGE Marcus BERRISFORD John CHOUDHARY Preeti BERTONI Damian DESHPANDE Mandar LEINES Grisell Diaz ELLAWAY Joseph EVANS Genevieve GÁBOROVÁ Romana GUPTA Deepti GUTMANAS Aleksandras HARRUS Deborah KLEYWEGT Gerard J BUENO Weslley Morellato NADZIRIN Nurul NAIR Sreenath PRAVDA Lukas AFONSO Marcelo Querino Lima SEHNAL David TANWEER Ahsan TOLCHARD James ABRAMS Charlotte DUNLOP Roisin VELANKAR Sameer

Article in Periodical

Protein Science, year: 2022, volume: 31, edition: 10, DOI

2021

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

SEHNAL David BITTRICH S. DESHPANDE M. SVOBODOVÁ Radka BERKA K. BAZGIER V. VELANKAR S. BURLEY S.K. KOČA Jaroslav ROSE A.S.

Article in Periodical

Nucleic acids research, year: 2021, volume: 49, edition: W1, DOI
NAChRDB: A Web Resource of Structure–Function Annotations to Unravel the Allostery of Nicotinic Acetylcholine Receptors

CHARESHNEU Aliaksei PANT Purbaj RAMOS Ravi José Tristao SEHNAL David GÖKBEL Tugrul IONESCU Crina-Maria KOČA Jaroslav

Article in Periodical

ACS Omega, year: 2021, volume: 6, edition: 36, DOI
NAChRDB: Interactive annotations to untangle allostery of nicotinic acetylcholine receptor

CHARESHNEU Aliaksei PANT Purbaj TRISTAO RAMOS Ravi José SEHNAL David GÖKBEL Tugrul IONESCU Crina-Maria KOČA Jaroslav

Conference abstract

Year: 2021, type: Conference abstract
NAChRDB: Interactive annotations to untangle allostery of nicotinic acetylcholine receptor

CHARESHNEU Aliaksei PANT Purbaj TRISTAO RAMOS Ravi José SEHNAL David GÖKBEL Tugrul IONESCU Crina-Maria KOČA Jaroslav

Appeared in Conference without Proceedings

Year: 2021, type: Appeared in Conference without Proceedings