Dizertacni prace / PhD theses in 1990s

• Chytry Milan (1994): Lesni vegetace Narodniho parku Podyji [Forest vegetation of the Podyji/Thayatal National Park] (fytocen./phytosociol.; supervisor: J. Vicherek)
• Tichy Lubomir (1999): Vliv stanovistnich podminek na diverzitu vegetace [Environmental relationships of vegetation diversity] (ecolog.; supervisor: J. Vicherek)
• Bures Petr (1999): Eleocharis R. Br. subser. Eleocharis. Biosystematicka studie stredoevropskych taxonu se zvlastnim zretelem k uzemi Ceske republiky [Eleocharis R. Br. subser. Eleocharis. Biosystematic study of the Central European taxa with special regard to the Czech Republic] (taxonom.; supervisor: † M. Smejkal, V. Rehorek)

Dizertacni prace / PhD theses in 2000s

• Danihelka Jiri (2000): Achillea millefolium agg. v Ceske republice [Achillea millefolium agg. in the Czech Republic] (taxonom.; supervisor: † M. Smejkal, V. Rehorek)
• Hrouda Petr (2000): Hlivy a houzevnatce Ceske a Slovenske republiky [Pleurotoid fungi of the family Polyporaceae in the Czech Republic and Slovakia] (mycolog.; supervisor: J. Spacek)
• Repka Radomir (2002): Taxonomie Carex muricata agg. v Ceske republice [Taxonomy of the Carex muricata agg. in the Czech Republic] (taxonom.; supervisor: V. Rehorek)
• Hajek Michal (2002): Svahova prameniste magurskeho flyse [Sloping springs of the magura flysh] (ecolog.; supervisor: V. Rehorek)
• Koci Martin (2003): Syntaxonomicka revize vegetace subalpinskych vysokobylinnych niv tridy Mulgedio-Aconitetea v CR [Subalpine tall-forb vegetation (Mulgedio-Aconitetea) in the Czech Republic - syntaxonomical revision] (phytosociol.; supervisor: M. Chytry)
• Lososova Zdenka (2003): Vegetace polnich plevelu jizni Moravy [Weed vegetation in South Moravia] (phytosociol.; supervisor: M. Chytry)
• Sedlakova Iva (2003): Sukcese vegetace teplomilnych vresovist v narodnim parku Podyji [Succession of dry heathlands in Podyji National Park] (ecolog.; supervisor: M. Chytry)
• Stoneberg-Holt Sierra Dawn (2005): The trnL–F plastid DNA region and its application to phylogeographic analysis in Poa pratensis agg. (phylogeogr.; supervisor: M. Dvorakova, consultant: P. Bures)
• Hajkova Petra (2005): Ekologie a vyvoj pramenistnich slatinist v zapadni casti Karpat [Ecology and development of Western Carpathians spring fens] (ecolog.; supervisor: K. Rybnicek)